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Scientists decode genome of sea cucumber thriving in hydrothermal vents
The sequencing of the Chiridota heheva genome by the Sanya Institute of Deep-sea Science and Engineering represents a significant advancement in marine biology. The sampling site for the sea cucumber was at the Kairei vent field at the bottom of Indian Ocean. The inset shows a photo of sampling at a depth of 2,428 m of the sea cucumber Chiridota heheva used for genome sequencing.
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Scientists decode genome of sea cucumber thriving in hydrothermal vents
by Simon Mansfield
Sydney, Australia (SPX) Jan 10, 2024

In a remarkable feat of marine biology, scientists from the Sanya Institute of Deep-sea Science and Engineering in China have successfully sequenced the complete genome of an extraordinary sea cucumber, Chiridota heheva, thriving in the inhospitable realms of hydrothermal vents. Published in the journal GigaScience, this research represents a significant milestone in understanding how complex organisms adapt to some of the most extreme environments on Earth.

Hydrothermal vents, known for their rapid temperature fluctuations and challenging chemical makeup, including acidic pH, sulfur, and methane richness, present a hostile environment for life. The high hydrostatic pressure and perpetual darkness of the deep sea further contribute to the harsh conditions. Despite these factors, Chiridota heheva, a species of sea cucumber, not only survives but thrives in these depths.

The team's journey to this discovery began in 2019 during a Chinese deep-sea expedition. Utilizing the manned research submarine "Shenhaiyongshi," researchers collected a specimen of C. heheva from the Indian Ocean's Kairei vent field at a remarkable depth of 2,428 meters. The Kairei vent's waters are particularly rich in dissolved iron, adding another layer of complexity to the already challenging living conditions.

Sea cucumbers, part of the echinoderm family, which includes sea urchins and stars, have unique body plans and are found across the world's ocean floors. These creatures play a vital role in marine ecosystems, feeding on detritus and exploring the sediment with their tentacles. While high-quality genomes of sea cucumbers have been previously available, this study marks the first genomic exploration of a species collected from a hydrothermal vent.

The genomic analysis of C. heheva has revealed fascinating insights. Notably, several gene families are expanded in this sea cucumber compared to its relatives. These expansions, particularly in genes involved in DNA repair and iron metabolism, suggest a genetic foundation for the species' adaptation to its harsh, iron-rich habitat. This discovery is a first step in understanding how these resilient creatures manage to survive and reproduce in such extreme conditions.

The implications of this research extend beyond Chiridota heheva. The genomic data obtained provides a valuable resource for further studies on sea cucumbers and the unique fauna of hydrothermal vents.

By shedding light on the genetic adaptations necessary for life in extreme environments, this research enhances our understanding of the limits of life on Earth and potentially other celestial bodies. Moverover, it underscores the resilience and adaptability of life in the face of extreme environmental challenges, offering a new perspective on the capabilities of life forms to thrive in seemingly inhospitable conditions.

Research Report:A high-quality chromosomal genome assembly of the sea cucumber Chiridota heheva and its hydrothermal adaptation

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